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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13306631_13312111_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13306631 - 13312111
Intron Length:
5481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
TATCCTTTCAGC
Flanking Amino Acid:
RKAYKPELIKDGKFGAYMQV
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
86.7
0.83
0.7
84.2
23.6
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
49.4
-0
2
64.62
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004371
13302904 - 13321556
18653