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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13312210_13321379_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13312210 - 13321379
Intron Length:
9170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGAG
5'SS Class:
major
3'SS Sequence:
GCTTTGTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTTTTCTCACTT
Flanking Amino Acid:
SPAAAVDPKQLTKLEKQQQR
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
65.6
40.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62.7
0.29
1
58.7
41.1
Minor 5ss
35
-1.7
3.4
45.9
49.3
Minor BPS
56.1
0.27
1.8
76.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004266
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004371
13302904 - 13321556
18653