Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1335858_1340128_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1335858 - 1340128

Intron Length:

4271

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGCCG

5'SS Class:

major

3'SS Sequence:

TTCCCCTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAAAA

U12 Branch Point Sequence:

TTTCCCCTAAAC

Flanking Amino Acid:

KRKKIWREEKERLLKMTLEE

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.2

50.9

45.5

Major BPS

52.9

0.07

1.1

59.3

35.9

Major PPT

69.9

0.45

0.9

33.6

Minor 5ss

30.1

-2.3

3.4

39.9

45.6

Minor BPS

64.2

0.43

1.8

78.61

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048327

1335164 - 1410865

75702

ENSAPLT00000019346

1335164 - 1372464

37301

ENSAPLT00000012919

1335164 - 1402503

67340