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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1340246_1359648_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1340246 - 1359648
Intron Length:
19403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GCTTTTGTAACC
Flanking Amino Acid:
EEMKSKNESDGENAKEEQQG
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.6
0.55
0.8
69.9
31
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
53.8
0.1
2
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012416
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048327
1335164 - 1410865
75702
ENSAPLT00000019346
1335164 - 1372464
37301
ENSAPLT00000012919
1335164 - 1402503
67340