Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13435811_13436735_F

Intron Information:

Intron Rank:

138241

Intron Class:

major

Intron Phase:

Intron Coordinates:

13435811 - 13436735

Intron Length:

925

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGTGAC

5'SS Class:

strong_major

3'SS Sequence:

CATTCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

GCCATTTTGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

71.9

33.8

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

0.74

0.8

76.9

31.3

Minor 5ss

26.1

-2.7

3.2

33.4

42.6

Minor BPS

51.3

0.03

1.3

54.53

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024374

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042075

13434857 - 13436945

2089