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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13470479_13479828_F

Intron Information:

Intron Rank:
127256
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13470479 - 13479828
Intron Length:
9350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTCTAA
5'SS Class:
weak_major
3'SS Sequence:
TGTATATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCCGTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.1
58.4
36.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.8
0.6
0.9
73.8
40.6
Minor 5ss
49.5
-0
2.5
61.2
45.6
Minor BPS
51.5
0.04
2.2
72.6
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028451
13470210 - 13481042
10833