About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13479955_13480809_F

Intron Information:

Intron Rank:
127257
Intron Class:
major
Intron Phase:
Intron Coordinates:
13479955 - 13480809
Intron Length:
855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TTTATAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTCTTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
81.1
0.7
0.9
74.3
39.2
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
66.3
0.59
1.9
88.46
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018621
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028451
13470210 - 13481042
10833