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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13505064_13515752_F

Intron Information:

Intron Rank:
150209
Intron Class:
major
Intron Phase:
Intron Coordinates:
13505064 - 13515752
Intron Length:
10689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
TTAATATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATATTTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.1
0.61
0.9
70.8
39.7
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
72
0.69
1.1
73.84
31.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030731
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043597
13504828 - 13517208
12381