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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13618721_13624285_R

Intron Information:

Intron Rank:
145721
Intron Class:
major
Intron Phase:
Intron Coordinates:
13618721 - 13624285
Intron Length:
5565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.6
37
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.4
0.82
0.7
81
29.7
Minor 5ss
32.9
-1.9
2.9
41.2
44.6
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025797
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037343
13616662 - 13642407
25746