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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13638961_13642078_R

Intron Information:

Intron Rank:
145724
Intron Class:
major
Intron Phase:
Intron Coordinates:
13638961 - 13642078
Intron Length:
3118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025797
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037343
13616662 - 13642407
25746