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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13787493_13794081_F

Intron Information:

Intron Rank:
126455
Intron Class:
major
Intron Phase:
Intron Coordinates:
13787493 - 13794081
Intron Length:
6589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GCTTTTTCCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.2
0.77
0.8
81.6
30.5
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
43.6
-0.6
1.9
46.95
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035369
13787279 - 13794586
7308