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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13787493_13806361_F

Intron Information:

Intron Rank:
126461
Intron Class:
major
Intron Phase:
Intron Coordinates:
13787493 - 13806361
Intron Length:
18869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCAGTTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATTATTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77
0.61
0.9
73.9
40.2
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
58.1
0.25
1.8
73.18
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048344
13787279 - 13806562
19284