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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13818024_13818574_F

Intron Information:

Intron Rank:
126439
Intron Class:
major
Intron Phase:
Intron Coordinates:
13818024 - 13818574
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTATACACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TCTTCCTATACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
67.3
0.39
1
59.8
40.1
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
61.5
0.35
2
75.18
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029831
13787279 - 13819351
32073
ENSAPLT00000019470
13787279 - 13819351
32073