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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13818024_13914163_F

Intron Information:

Intron Rank:
126449
Intron Class:
major
Intron Phase:
Intron Coordinates:
13818024 - 13914163
Intron Length:
96140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
77.9
35.1
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
53.9
0.2
1.9
76.95
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033306
13817809 - 13977331
159523