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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13877139_13914163_F

Intron Information:

Intron Rank:
126442
Intron Class:
major
Intron Phase:
Intron Coordinates:
13877139 - 13914163
Intron Length:
37025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.8
0.69
0.9
77.9
35.1
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
53.9
0.2
1.9
76.95
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029105
13876745 - 14011083
134339