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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13914234_13973099_F

Intron Information:

Intron Rank:
126457
Intron Class:
major
Intron Phase:
Intron Coordinates:
13914234 - 13973099
Intron Length:
58866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GCTTACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
81.6
0.71
0.8
76
32.4
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
71.9
0.77
1.5
81.75
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036508
13914073 - 13973129
59057