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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13914234_14006869_F

Intron Information:

Intron Rank:
126443
Intron Class:
major
Intron Phase:
Intron Coordinates:
13914234 - 14006869
Intron Length:
92636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
AATTACAAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
64.7
0.37
1
73
31.5
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
44.8
-0.5
2.1
53.14
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039432
13794016 - 14011083
217068
ENSAPLT00000034106
13868800 - 14011083
142284
ENSAPLT00000029105
13876745 - 14011083
134339