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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_13914234_14010389_F

Intron Information:

Intron Rank:
126456
Intron Class:
major
Intron Phase:
Intron Coordinates:
13914234 - 14010389
Intron Length:
96156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
GGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTAACTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.3
0.75
0.9
77.3
37
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
58.6
0.35
1.7
75.56
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035648
13914073 - 14010648
96576