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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14006911_14010389_F

Intron Information:

Intron Rank:
126444
Intron Class:
major
Intron Phase:
Intron Coordinates:
14006911 - 14010389
Intron Length:
3479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTAACTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.3
0.75
0.9
77.3
37
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
58.6
0.35
1.7
75.56
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018154
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039432
13794016 - 14011083
217068
ENSAPLT00000034106
13868800 - 14011083
142284
ENSAPLT00000029105
13876745 - 14011083
134339