Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14054862_14058410_F

Intron Information:

Intron Rank:

148030

Intron Class:

major

Intron Phase:

Intron Coordinates:

14054862 - 14058410

Intron Length:

3549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGAACTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTCTTGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.4

33.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.41

0.9

38.3

Minor 5ss

42.4

-0.8

2.8

51.5

44.9

Minor BPS

82.9

1.11

1.2

96.98

27.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029695

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031017

14054765 - 14058850

4086