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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14058505_14066695_F

Intron Information:

Intron Rank:
148032
Intron Class:
major
Intron Phase:
Intron Coordinates:
14058505 - 14066695
Intron Length:
8191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTCTCAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86
0.81
0.8
80.2
36.9
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
59.6
0.28
1.8
74.18
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029695
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031759
14058195 - 14066828
8634