Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14107901_14108031_R

Intron Information:

Intron Rank:

138262

Intron Class:

major

Intron Phase:

Intron Coordinates:

14107901 - 14108031

Intron Length:

131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGAAG

5'SS Class:

strong_major

3'SS Sequence:

ATTCAATGTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTCAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

39.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

65.4

0.35

59.4

Minor 5ss

-2.2

3.2

38.7

46.6

Minor BPS

58.4

0.13

1.8

68.49

39.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021928

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042446

14107402 - 14115666

8265

ENSAPLT00000033421

14107402 - 14108477

1076