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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14108129_14115513_R

Intron Information:

Intron Rank:
138264
Intron Class:
major
Intron Phase:
Intron Coordinates:
14108129 - 14115513
Intron Length:
7385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTACCCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CTGTCCTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
77.9
0.63
0.8
73.8
31
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
68.3
0.55
1.7
73.81
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021928
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042446
14107402 - 14115666
8265