About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14183615_14183970_F

Intron Information:

Intron Rank:
138228
Intron Class:
major
Intron Phase:
Intron Coordinates:
14183615 - 14183970
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
CTGTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GCTTGCTCAGGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
82.4
0.73
0.8
76.8
31.8
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
39.4
-0.9
2.3
43.99
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024345
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031609
14181106 - 14185800
4695