Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14387842_14452346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14387842 - 14452346

Intron Length:

64505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

TATGTGCTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTTAT

U12 Branch Point Sequence:

ATGTGCTTACAG

Flanking Amino Acid:

TGFRGKDCSEEDNYVEGLAH

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

75.1

35.1

Major BPS

0.47

1.2

61.1

45.5

Major PPT

76.9

0.61

69.1

41.6

Minor 5ss

32.3

-2

3.1

41.7

Minor BPS

46.6

-0.3

2.2

54.68

46.2

Associated Gene:

Gene:

NRXN1

Ensembl Gene ID:

ENSAPLG00000003929

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017983

14387103 - 15086872

699770

ENSAPLT00000045928

14387103 - 15086872

699770

ENSAPLT00000043543

14387103 - 15086872

699770

ENSAPLT00000024029

14387103 - 15087266

700164

ENSAPLT00000019780

14387103 - 15086872

699770

ENSAPLT00000047753

14387103 - 15086872

699770