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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14458031_14620610_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14458031 - 14620610
Intron Length:
162580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACAT
5'SS Class:
major
3'SS Sequence:
TATGTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATAT
Flanking Amino Acid:
LMMGDQGKSKGKEEYIATFK
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
39.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.63
0.9
69.8
41.2
Minor 5ss
39.8
-1.1
3.1
56.6
47.5
Minor BPS
54.6
0.22
1.8
76.72
39.5

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000017983
14387103 - 15086872
699770