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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14709262_14714018_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14709262 - 14714018
Intron Length:
4757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATGG
5'SS Class:
major
3'SS Sequence:
TTACTGTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCTTTTTACT
Flanking Amino Acid:
LMVDDQQAMTGQMAGDHTRL
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.2
43.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.7
0.47
1.1
71.3
38.4
Minor 5ss
36
-1.6
3.3
47.6
47.8
Minor BPS
66.3
0.59
1.6
84.95
35.1

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024029
14387103 - 15087266
700164
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000047753
14387103 - 15086872
699770
ENSAPLT00000017983
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770