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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14714401_14714956_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14714401 - 14714956
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CCTCTTTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GAAACTTCCATT
Flanking Amino Acid:
NDFIVVELVKGYLHYVFDLG
Intron Amino Acid Position:
950

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
43.3
-0.4
1.9
55.89
40.2

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000047753
14387103 - 15086872
699770
ENSAPLT00000017983
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770
ENSAPLT00000024029
14387103 - 15087266
700164