About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14715148_14731876_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14715148 - 14731876
Intron Length:
16729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCTGCTTAACA
Flanking Amino Acid:
TAGARNLDLKSDLYIGGVAK
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
77.5
0.62
0.9
73.1
36.1
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
74.7
0.77
1.7
83.03
38.2

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017983
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770
ENSAPLT00000024029
14387103 - 15087266
700164
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000047753
14387103 - 15086872
699770