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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14732051_14737724_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14732051 - 14737724
Intron Length:
5674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGAAT
5'SS Class:
major
3'SS Sequence:
ATGTTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGTTCTCATCA
Flanking Amino Acid:
CNGQIERGCEGPSTTCQEDS
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.7
39.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73
0.52
1
71.7
38.7
Minor 5ss
32.9
-1.9
3.4
48.5
47.3
Minor BPS
52.5
0.08
1.8
65.54
41

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024029
14387103 - 15087266
700164
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000017983
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770