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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14736725_14737724_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14736725 - 14737724
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAGC
5'SS Class:
major
3'SS Sequence:
ATGTTCTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGTTCTCATCA
Flanking Amino Acid:
EVALMKADLQGPSTTCQEDS
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
69.5
41.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73
0.52
1
71.7
38.7
Minor 5ss
34
-1.8
3.1
45.3
42.8
Minor BPS
52.5
0.08
1.8
65.54
41

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047753
14387103 - 15086872
699770