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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14810635_14872100_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14810635 - 14872100
Intron Length:
61466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTTCG
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCCTTTACA
Flanking Amino Acid:
RSPASLRGGHAGTTYIFSKG
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
59.7
41.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.8
0.87
0.6
83.5
24.8
Minor 5ss
34.2
-1.8
3.1
41.4
45
Minor BPS
76.6
0.83
1.6
83.55
36.9

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035018
14810289 - 15086872
276584