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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_148920_157056_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
148920 - 157056
Intron Length:
8137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TATTGGGATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACCT
Flanking Amino Acid:
TRRMLQLVEESKDAGIRTLV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
61.7
0.26
1.1
55.2
44.6
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
71.4
0.75
1.7
83.36
44

Associated Gene:

Gene:
SNAP25
Ensembl Gene ID:
ENSAPLG00000008826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009204
148081 - 174889
26809