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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_14996725_14998203_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14996725 - 14998203
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTATCTTTACAG
Flanking Amino Acid:
RVVDEWLLDKGRQLTIFNSQ
Intron Amino Acid Position:
1260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
83.6
0.75
0.8
76.9
36.6
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
57.8
0.11
1.8
65.31
42.5

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024029
14387103 - 15087266
700164
ENSAPLT00000047753
14387103 - 15086872
699770
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770
ENSAPLT00000035018
14810289 - 15086872
276584