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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15071363_15086564_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15071363 - 15086564
Intron Length:
15202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTACCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATCT
Flanking Amino Acid:
DPCEPSSGGLANPTRAGGGR
Intron Amino Acid Position:
1396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1.1
75.3
36.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
0.9
70.3
35
Minor 5ss
29.9
-2.3
2.6
32.9
41.9
Minor BPS
67.8
0.64
1.8
87.99
36.8

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004036
14387103 - 15086872
699770
ENSAPLT00000035018
14810289 - 15086872
276584
ENSAPLT00000047753
14387103 - 15086872
699770
ENSAPLT00000024029
14387103 - 15087266
700164
ENSAPLT00000019780
14387103 - 15086872
699770
ENSAPLT00000045928
14387103 - 15086872
699770
ENSAPLT00000017983
14387103 - 15086872
699770
ENSAPLT00000043543
14387103 - 15086872
699770