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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15086615_15087046_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15086615 - 15087046
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTCGT
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGTTTTTAAAA
Flanking Amino Acid:
GGREYPGSSEKRELINSLTS
Intron Amino Acid Position:
1408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
70.7
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
30.6
-2.2
2.9
41.9
44.5
Minor BPS
63.2
0.41
1.4
67.43
39.5

Associated Gene:

Gene:
NRXN1
Ensembl Gene ID:
ENSAPLG00000003929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024029
14387103 - 15087266
700164