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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15223646_15224868_R

Intron Information:

Intron Rank:
131720
Intron Class:
major
Intron Phase:
Intron Coordinates:
15223646 - 15224868
Intron Length:
1223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATAT
5'SS Class:
major
3'SS Sequence:
CATTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTCTGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
76.2
28.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85.8
0.81
0.8
80.2
31.5
Minor 5ss
33.5
-1.9
3.2
46.6
48.7
Minor BPS
66.4
0.51
2
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018052
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023629
15223433 - 15232739
9307