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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15270818_15377607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15270818 - 15377607
Intron Length:
106790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
SCINTAANCIRRFVLTKMRV
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.7
44.5
Major BPS
70.5
0.51
1
72
33.1
Major PPT
87
0.83
0.7
84.7
28.8
Minor 5ss
42.4
-0.8
3.5
64.4
47
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000045666
15270450 - 15427239
156790