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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15344936_15377607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15344936 - 15377607
Intron Length:
32672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
PRDIPTNATELRFVLTKMRV
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.4
44.5
Major BPS
70.5
0.51
1
72
33.1
Major PPT
87
0.83
0.7
84.7
28.8
Minor 5ss
35
-1.7
3.3
50.1
46.1
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025949
15344570 - 15427239
82670
ENSAPLT00000023513
15344570 - 15427239
82670