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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15377680_15400645_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15377680 - 15400645
Intron Length:
22966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
AATTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GACTTTTTAATT
Flanking Amino Acid:
AFAGLHDLEKIEISQNDALE
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.4
0.71
0.9
77.9
40.2
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
67.1
0.61
1.2
72.9
38.6

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045666
15270450 - 15427239
156790
ENSAPLT00000025949
15344570 - 15427239
82670
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000045726
15270450 - 15427239
156790