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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15400721_15401181_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15400721 - 15401181
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATGTTTCACT
Flanking Amino Acid:
VFSNLPKLHEIRIEKANNLV
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
50.2
0.09
2.2
73.14
43.8

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025949
15344570 - 15427239
82670
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000003803
15389797 - 15426972
37176
ENSAPLT00000045666
15270450 - 15427239
156790
ENSAPLT00000044530
15344570 - 15426972
82403