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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15401257_15407874_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15401257 - 15407874
Intron Length:
6618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
CTCTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATAATTGTAATT
Flanking Amino Acid:
AFQHLPSLRYLLISNTGLRF
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.3
33.3
Major BPS
80
0.75
1
78.6
31
Major PPT
81.8
0.72
0.7
80.8
24.5
Minor 5ss
46.4
-0.4
3.2
71.4
39.7
Minor BPS
48.3
-0
2
67.04
38.3

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025949
15344570 - 15427239
82670
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000003803
15389797 - 15426972
37176
ENSAPLT00000045666
15270450 - 15427239
156790
ENSAPLT00000044530
15344570 - 15426972
82403