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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15410199_15411960_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15410199 - 15411960
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TCTGACCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTCTTGATCT
Flanking Amino Acid:
FMGLSSESVILHWNYAHLPS
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
67.3
39.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
67.1
0.38
1
61.2
39.9
Minor 5ss
32.5
-2
2.8
43.3
43.8
Minor BPS
68.5
0.66
1.7
88.81
36

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045666
15270450 - 15427239
156790
ENSAPLT00000025949
15344570 - 15427239
82670
ENSAPLT00000023513
15344570 - 15427239
82670