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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15413192_15413305_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15413192 - 15413305
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAACTATT
5'SS Class:
weak_major
3'SS Sequence:
TTGTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTAGCATCAATA
Flanking Amino Acid:
HAFNGTYLDELNLSDNQNLE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
75.1
40.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
50.5
0.02
2.6
78.9
34.6
Minor BPS
50.2
0
1.9
65.86
40.5

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000003803
15389797 - 15426972
37176
ENSAPLT00000045666
15270450 - 15427239
156790
ENSAPLT00000044530
15344570 - 15426972
82403
ENSAPLT00000025949
15344570 - 15427239
82670