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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15413381_15418530_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15413381 - 15418530
Intron Length:
5150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATCATAATT
Flanking Amino Acid:
VFQGANGPVVLDISRTKISF
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
100
1.24
0.5
100
0
Major PPT
80.7
0.69
1
82.2
33.3
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
66.7
0.6
1.6
85.4
34.6

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044530
15344570 - 15426972
82403
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000003803
15389797 - 15426972
37176
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000045666
15270450 - 15427239
156790