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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15413381_15425744_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15413381 - 15425744
Intron Length:
12364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTACAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTACAATT
Flanking Amino Acid:
VFQGANGPVVFTELHPICSI
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
0.9
75.2
38.5
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
49.8
0.07
1.8
72.15
39.6

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025949
15344570 - 15427239
82670