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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15418717_15425744_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15418717 - 15425744
Intron Length:
7028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTTTTTACAATT
Flanking Amino Acid:
CCAFTNWKRQNTELHPICSI
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79
0.65
0.9
75.2
38.5
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
49.8
0.07
1.8
72.15
39.6

Associated Gene:

Gene:
FSHR
Ensembl Gene ID:
ENSAPLG00000003689
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044530
15344570 - 15426972
82403
ENSAPLT00000023513
15344570 - 15427239
82670
ENSAPLT00000003803
15389797 - 15426972
37176
ENSAPLT00000045726
15270450 - 15427239
156790
ENSAPLT00000045666
15270450 - 15427239
156790