Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15524712_15532061_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15524712 - 15532061

Intron Length:

7350

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

CTTTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACAAT

U12 Branch Point Sequence:

TTTTCTTTTTTT

Flanking Amino Acid:

PPGARPAPARASFTHLPVKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.3

69.7

41.3

Major BPS

65.2

0.38

1.3

73.4

38.5

Major PPT

96.3

1.04

0.5

95.7

14.9

Minor 5ss

37.9

-1.4

2.6

42.8

36.9

Minor BPS

46.2

-0.2

3.6

83.31

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020794

15523751 - 15549359

25609