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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15532134_15536973_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15532134 - 15536973
Intron Length:
4840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATTACA
Flanking Amino Acid:
AFEGLRDAFIIEISQSDSLE
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
100
1.24
0.5
100
0
Major PPT
90.4
0.91
0.7
85.2
28
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
62.1
0.37
1.9
80.12
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003112
15528984 - 15549359
20376
ENSAPLT00000045360
15528984 - 15549359
20376
ENSAPLT00000020794
15523751 - 15549359
25609