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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15537049_15538350_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15537049 - 15538350
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TTTCCCTCATTA
Flanking Amino Acid:
AFDSLPALSEILILNTKNLL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
57
0.17
0.9
65
30.8
Major PPT
78.9
0.65
0.8
72.4
30.8
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
57.9
0.24
1.8
73.35
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045360
15528984 - 15549359
20376
ENSAPLT00000020794
15523751 - 15549359
25609
ENSAPLT00000003112
15528984 - 15549359
20376